Selective diversification of aquaculture stocks: A proposal for economically sustainable genetic conservation
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Abstract
The genetic diversity of aquaculture stocks can be maintained, and their genetic impact on wild stocks minimized, by breeding programmes that deliberately generate genetic diversity. Current animal breeding practices are likely to reduce the diversity of domestic stocks if they are extended to aquaculture. It is proposed that national breeding programmes for aquaculture should, instead, try to develop numerous breeds specially adapted to local environments and aquaculture systems. An economic model is presented of decision-making by individual farmers who, in choosing which breed to produce, determine the "fitness" of the breeds in a meta-population that includes all breeds. As long as strong genotype-environment interaction for production traits is maintained by artificial selection, the economic self-interest of farmers should ensure the stability of genetic polymorphisms among breeds. Genetic variation would be conserved (in the among-breed component of genetic diversity) but not the primordial distribution of gene and genotype frequencies. Economic benefits to farmers, plus a high return on investment at the national or supra-national level, makes breed diversification an attractive conservation strategy even though it is admittedly a compromise from a purely genetic viewpoint.
Suggested Citation
Doyle, R. W., Shackel, N. L., Basiao, Z., Uraiwan, S., Matricia, T., & Talbot, A. J. (1991). Selective diversification of aquaculture stocks: A proposal for economically sustainable genetic conservation. Canadian Journal of Fisheries and Aquatic Sciences , 48(S1), 148-154. https://doi.org/10.1139/f91-313
DOI
10.1139/f91-313Type
ArticleISSN
0706-652XCollections
- Journal Articles [1266]
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Population genetic variation and genetic structure of widely distributed Japanese endemic freshwater crustaceans: Geothelphusa dehaani and Gammarus nipponensis
Freshwater crustaceans, Geothelphusa dehaani (White 1847) and Gammarus nipponensis (Ueno 1940), are commonly found in rivers, streams and lakes in Japan. The distribution range of G. nipponensis is concentrated in the Western portion of Japan while G. dehaani exhibits a more widespread distribution. Both species undergo direct development from eggs to juveniles and have limited migratory abilities, as they are intolerant to brackish and marine environments. This restricted dispersal capability leads to geographical isolation among populations, making these freshwater crustaceans as ideal models for studying gene flow. Despite their significance, there were scarcity of studies that clarified genetic patterns in these two widely distributed crustaceans. Thus, the objectives of this thesis were to conduct genetic assessments on both G. dehaani and G. nipponensis to understand their population structure and variation, and to provide insights into past geological events that have contributed to these variations. Here, mitochondrial DNA sequence data were utilized to infer the relationships between the local populations of these species. Results of this study revealed substantial genetic variations among populations in both crustaceans. In G. dehaani, distinct haplotypes were observed in most populations, while G. nipponensis exhibited remarkably high mitogenome sequence variability across different localities. These findings implied extremely limited gene flow within each population and a reduced capacity for migration over extended periods, a characteristic that distinguishes them from other strictly freshwater species. The time to most recent common ancestor (TMRCA) estimates proposed that the ancestor lineage of G. dehaani was introduced more recently in Japan, approximately around the Pleistocene (~1 million years ago), while that of G. nipponensis predates the separation of Japan from mainland Asia around late Oligocene (~24 million years ago). Despite these differences, the structural patterns of populations in both species appeared relatively similar. Based on the phylogenetic analysis, the populations in both species are considered highly monophyletic with several geographical groups detected. In G. dehaani, four distinct geographic groups formed: Clade I (Honshu and Shikoku), Clade II (Eastern Kyushu), Clade III (Southern Kyushu and a portion of Eastern Honshu) and Clade IV (Western Kyushu). In G. nipponensis, the three identified groups were Clade I (Honshu and Shikoku), Clade II (Eastern Kyushu) and Clade III (Western Kyushu). The geological boundaries separating these major clades consisted of ancient lowlands such as the present Seto Inland Sea and the Chikushi and Fukuoka plains, acting as barriers for gene flow. The Seto Inland Sea potentially contributes to the divergence of Clade I from the Kyushu group. Despite the Seto Inland Sea acting as a barrier, Honshu and Shikoku displayed closer genetic relationships, possibly attributed to their more recent separation. Likewise, the Chikushi and Fukuoka plains was a significant barrier, defining distinct genetic groups in Kyushu. In conclusion, this study emphasized the importance of these two freshwater crustaceans in understanding genetic relationships characterized with limited gene flow and the impact of geological events on their population dynamics in the Japanese Archipelago. The need for further examination of morphological and behavioral characteristics based on the genetically detected groups of G. dehaani and G. nipponensis is suggested. -
Genetic assessment of philippine milkfish (Chanos chanos) stocks based on novel microsatellites for markeraided broodstock management
Romana-Eguia, Maria Rowena R.
; Santos, Brian S.; Ikeda, Minoru; Basiao, Zubaida U.; de Jesus-Ayson, Evelyn Grace T.; Kijima, Akihiro (Elsevier, 2017)
Reports on genetic diversity within/among milkfish populations using DNA markers are sparse. Earlier work dealt with evolutionary relationships among wild populations to define management units in the Indo-Pacific region where milkfish naturally abound. However, application of milkfish genetic markers in broodstock development and management remains to be investigated. Here, nine novel microsatellites developed by NGS were utilized to (a) describe the genetic structure of Philippine wild and hatchery-bred milkfish; (b) monitor the impact of domestication selection and inbreeding; and (c) formulate marker-aided broodstock management methods, a prerequisite to genetic improvement. Milkfish samples from three wild populations: Claveria (CLA), Currimao (CUR), Camiguin (CAM); eleven local hatchery stocks: SEAFDEC Integrated Hatchery (SIH), SEAFDEC Big Hatchery-Igang batches 1 and 2 (SBH-I1 and SBH-I2), SEAFDEC Big Hatchery-Dumangas (SBH-D), Hautea Hatchery (HH), Sual Pangasinan Hatchery (SPH), BFAR Dagupan Hatchery (BDH), BFAR Bohol Hatchery (BoH), BFAR Palawan Hatchery (PAL), Zambales Hatchery-P0 (ZH-P0), Zambales Hatchery-F1 (ZH-F1); and a hatchery stock from West Java in Indonesia (WJH), were examined. An Indonesian stock was included since in the Philippines, Indonesian milkfish fingerlings are imported and farmed for having purportedly better production traits. Genetic diversity indices such as expected heterozygosity (He) and allele frequency (A) ranged from 0.655 to 0.697 and 9.2 to 11.1, respectively. AMOVA showed significant but low genetic differentiation among the milkfish populations (FST = 0.013; P=0.000,) since much of the variation is attributed to intrapopulation differences (98.6%). The oldest hatchery stock SIH (30-35 years) had relatively moderate genetic variability (He = 0.66, A = 10.6), which is lower than that of 5-year old SBH-I1 (He= 0.687, A= 11.5) considering that both stocks originally came from the same source in the wild. A reduction in genetic diversity was seen when a local hatchery stock (ZH-P0;He = 0.66 and A= 10.8) was monitored after one generation (ZH-F1; He = 0.65, A=9.3). Finally, the Indonesian stock WJH had genetic variability levels (He= 0.66; A= 10.5) comparable with local stocks. Results of genetic analyses are herein discussed in the context of promoting effective milkfish broodstock management practices for the production of good quality seed stock.




