Southeast Asian Fisheries Development Center, Aquaculture Department Institutional Repository (SAIR) is the official digital repository of scholarly and research information of the department. This is to enable the effective dissemination of AQD researchers' in-house and external publications for free and online. The repository uses DSpace, an open source software, developed at Massachusetts Institute of Technology (MIT) Libraries. It is an Open Archives Initiative (OAI)-compliant.

Initially, the repository shall contain preprints, full-texts or abstracts of journal articles, books and conference proceedings written by SEAFDEC/AQD scientists and researchers. The aim is to promote these publications especially those published in international peer-reviewed journals and generate higher citation through increased visibility.

It will also provide free and open access to all in-house publications of SEAFDEC/AQD. Full-text digitized copies of fishfarmer-friendly materials like books, handbooks, policy guidebooks, conference proceedings, extension manuals, institutional reports, annual reports (AQD Highlights), and newsletters (SEAFDEC Asian Aquaculture, Aqua Farm News, AquaDept News and AQD Matters) can be retrieved and downloaded.

In the future, SAIR will expand its collection to include images, presentations, audios, and videos among others.

The objectives of the repository are to: (1) to provide reliable means for SEAFDEC/AQD researchers to store, preserve and share their research outputs and (2) to provide easy access and increase the visibility of SEAFDEC/AQD scientific publications

SAIR also aims to encourage SEAFDEC/AQD researchers for self-archiving and submitting pre-prints from which metadata will be screened and approved by the library staff.

  • Article

    Improved growth performance of Gracilariopsis heteroclada via short-term nitrogen enrichment 

    SS Santander-Avanceña, MRJ Luhan & J Felera-Panizales - Botanica Marina, 2015 - De Gruyter
    This study examined the effect of short-term nitrogen (N) enrichment on Gracilariopsis heteroclada growth and agar quality. Planting materials were soaked in different concentrations of ammonium chloride (NH4Cl) for 6 h. Total thallus N content was highest in Gp. heteroclada enriched in 300 mg l-1 NH4Cl. Growth experiments showed that this enrichment treatment (300 mg l-1 NH4Cl for 6 h) increased the growth of Gp. heteroclada (4.22±0.09% day-1) compared with the control (3.68±0.12% day-1). Pond culture using enriched Gp. heteroclada resulted in high growth rates (6.14±0.50% day-1). No epiphyte growth was observed during either the growth experiment or the pond culture. There were no significant differences between the agar yields of the enriched (3.65±0.36%) or control (3.78±0.18%) Gp. heteroclada. Additionally, no significant differences were detected when the gel strength of the enriched (611±22 g cm-2) and control (587±11 g cm-2) Gp. heteroclada were compared. The results suggest that the short-term N enrichment method could be an alternative culture strategy to increase Gp. heteroclada production and lower farming costs.

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  • Article

    Genetic assessment of milkfish (Chanos chanos Forsskal) stocks based on novel short tandem repeats for marker-aided broodstock management 

    MRR Romana-Eguia, BS Santos, M Ikeda, ZU Basiao & A Kijima - Aquaculture Research, 2018 - John Wiley and Sons
    Milkfish hatchery broodstock are either from on-grown wild-caught or hatchery-produced fry/juveniles. To determine if a marker-assisted management scheme can be formulated for improved milkfish hatchery production, milkfish stocks were genetically characterized using nine novel short tandem repeats or microsatellites. Eight wild-bred Philippine stocks (CLA, CUR, CAM, SIH, SBH-I1, HH, PAL and ZH-P0), four hatchery-bred stocks (SBH-I2, SBH-D, BoH and ZH-F1), two farm stocks of known mixed lineages (SPH and BDH) and one Indonesian hatchery-bred stock (WJH) were assessed. WJH was included since milkfish fingerlings from Indonesia reared in Philippine farms could be developed into future broodstock. Mean allelic richness (Ar) was highest in wild-bred stocks (9.5) and lowest in hatchery-bred spawners (9.1). Mean expected heterozygosities (He) were relatively similar in all stocks with wild-bred stocks slightly higher (0.67) than the others. An analysis of molecular variance indicated significant yet low genetic differentiation among stocks (FST = 0.013; p = .000) where variation (98.6%) was explained by intra-stock differences. In some of the domesticated stocks, reductions in mean allelic richness were observed in first generation hatchery broodstock (e.g. ZH-F1; Ar = 8.3), compared with their founder stock (e.g. ZH-P0; Ar = 9.4). The Indonesian stock was similar to local wild-bred stocks based on genetic variability indices; thus, it might be likely that the local stocks’ fitness traits could be comparable with the imported milkfish stock which has been perceived to be better. The quality of locally available farmed milkfish and prospects of formulating a broodstock management scheme for the production of good quality milkfish seedstock are herewith discussed.
  • Article

    Limit of colour vision in dim light in larvae of the giant freshwater prawn Macrobrachium rosenbergii 

    G Kawamura, TU Bagarinao, ASK Yong, AB Faisal & LS Lim - Fisheries Science, 2018 - Springer Verlag
    Colour vision depends on sufficient ambient light and becomes ineffective at a particular low light intensity. It is not known how decapod crustaceans see colour in dim light. In the present study we investigated the colour vision threshold in larvae of the giant freshwater prawn Macrobrachium rosenbergii in a tank under natural illumination. Plastic beads of different colours (blue, red, yellow and white) in various combinations were suspended in the tank. The larvae swam straight toward the beads and gathered around them. The number of larvae was highest on the blue and white beads. The luminance in the tank was then gradually decreased by covering it with different numbers of layers of black cloth, and the response of the larvae to the beads was video-recorded under infrared illumination. The preference for blue and white beads remained manifest as the luminance was reduced from 418 to 0.07 cd/m2, but not at 0.02 cd/m2, indicating a colour vision threshold between 0.07 and 0.02 cd/m2. The larvae have apposition compound eyes with large optical parameters, comparable to those of apposition eyes of nocturnal insects, which presumably capture more light and show enhanced sensitivity, enabling the larvae to see colour in dim light.
  • Article

    Characterisation of Vibrio isolates recovered from the eyes of cage-cultured pompano (Trachinotus blochii) infested with caligid parasites (Lepeophtheirus spinifer) 

    R Pakingking Jr., NB Bautista, D Catedral & EG de Jesus-Ayson - European Association of Fish Pathologists Bulletin, 2018 - European Association of Fish Pathologists
    Exophthalmia was documented among sea cage-cultured pompano (Trachinotus blochii) broodstocks with caligid parasite (Lepeophtheirus spinifer) infestation in the Philippines. Following sequencing, and based on the results of both diagnostic investigations and infection experiments, V. harveyi likely had a role in the reported exophthalmia cases, and this was initiated by L. spinifer infection.
  • Article

    Low ph water impairs the tactile sense of the postlarvae of the giant freshwater prawn Macrobrachium rosenbergii 

    G Kawamura, T Bagarinao, ASK Yong, SN Noor & LS Lim - Tropical Life Sciences Research, 2018 - Penerbit Universiti Sains Malaysia
    The effect of low pH on the tactile sense of Macrobrachium rosenbergii postlarvae was determined in the laboratory by means of two behavioural assays: shelter (netting) occupancy and jumping response to touch stimuli (taps) by a glass micropipette. The postlarvae were acclimated to pH 4, pH 5, pH 6 and pH 7.5 (control) in 45 L aquaria 5−7 d before the experiments. Shelter occupancy decreased with pH and was significantly lower at pH 4 and pH 5 than at pH 6 and in the control. The jumping response instantly followed a tap 93−98% of the time in the control, pH 6 and pH 5 treatments. However, the postlarvae showed significantly lower jumping response (65%) at pH 4, indicating an impaired tactile sense. Low pH 4−5 probably degrades the chitin of the sensory setae and inhibits the surface mechanoreceptors of the prawn postlarvae.
  • Article

    Quality assessment of newly hatched mud crab, Scylla serrata, larvae 

    ET Quinitio, JJ dela Cruz-Huervana & FD Parado-Estepa - Aquaculture Research, 2018 - Wiley
    Starvation and exposure to formalin were investigated as possible stress tests for evaluating the quality of mud crab, Scylla serrata, larvae. For the starvation stress test, newly hatched zoeae stocked in 150-ml containers were either starved or fed rotifers. Similarly, newly hatched zoeae were stocked in containers with seawater of 0 (control), 20, 30 and 40 mg/L formalin for the formalin stress test. The zoeae from the same batches were used for seed production to monitor their performance and validate the results of stress tests. Starvation was found to be unsuitable for larval quality evaluation. However, the impact of initial food deprivation on the newly hatched larvae indicates that feeding immediately after hatching is necessary for mud crab larvae. Exposure of larvae to 40 mg/L formalin for 3 hr appeared to be a reliable and practical method for larval quality assessment as the survival of larvae in the mass production tanks validated the classification of good and poor quality batches in the stress tests. On this basis, a hatchery operator can decide which batch should be cultured further. Finally, there appears to be a link between the quality of larvae and the performance at the megalopa and early juvenile crabs.

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