Southeast Asian Fisheries Development Center, Aquaculture Department Institutional Repository (SAIR) is the official digital repository of scholarly and research information of the department. This is to enable the effective dissemination of AQD researchers' in-house and external publications for free and online. The repository uses DSpace, an open source software, developed at Massachusetts Institute of Technology (MIT) Libraries. It is an Open Archives Initiative (OAI)-compliant.

Initially, the repository shall contain preprints, full-texts or abstracts of journal articles, books and conference proceedings written by SEAFDEC/AQD scientists and researchers. The aim is to promote these publications especially those published in international peer-reviewed journals and generate higher citation through increased visibility.

It will also provide free access to all in-house publications of SEAFDEC/AQD. Full-text digitized copies of fishfarmer-friendly materials like books, handbooks, policy guidebooks, conference proceedings, extension manuals, institutional reports, annual reports (AQD Highlights), and newsletters (SEAFDEC Asian Aquaculture, Aqua Farm News, AquaDept News and AQD Matters) can be retrieved and downloaded.

In the future, SAIR will expand its collection to include images, presentations, audios, and videos among others.

The objectives of the repository are to: (1) to provide reliable means for SEAFDEC/AQD researchers to store, preserve and share their research outputs and (2) to provide easy access and increase the visibility of SEAFDEC/AQD scientific publications

SAIR also aims to encourage SEAFDEC/AQD researchers for self-archiving and submitting pre-prints from which metadata will be screened and approved by the library staff.

  • Article

    Prospects of host-associated microorganisms in fish and penaeids as probiotics with immunomodulatory functions 

    CC Lazado, CMA Caipang & EG Estante - Fish and Shellfish Immunology, 2015 - Elsevier
    Aquatic animals harbor a great number of microorganisms with interesting biological and biochemical diversity. Besides serving as the natural defense system of the host, the utilization potential of this microbial association has been identified particularly as reservoirs of candidate probiotics. Host-derived probiotics have gained popularity in recent years as they offer an alternative source of beneficial microbes to the industry that is customarily dependent on the use of terrestrial microorganisms. At present, there is an overwhelming number of candidate probiotics in aquaculture but their large-scale application is restricted by bio-technological concerns and fragmentary documented probiotic actions. This paper presents the current understanding on the use of probiotics as a sustainable alternative that promotes health and welfare in fish and penaeids. In particular, this paper discusses the relevance of host microbiota and its potential as a source of candidate probiotics. It also revisits the interaction between probiotics and host immunity to provide the foundation of the immunomodulatory functions of host-derived probiotics. Several studies demonstrating the immunomodulatory capabilities of host-derived candidate probiotics are given to establish the current knowledge and provide avenues for future research and development in this thematic area of probiotics research in aquaculture.

Select a community to browse its collections.

  • Article

    Characterisation of Vibrio isolates recovered from the eyes of cage-cultured pompano (Trachinotus blochii) infested with caligid parasites (Lepeophtheirus spinifer) 

    R Pakingking Jr., NB Bautista, D Catedral & EG de Jesus-Ayson - European Association of Fish Pathologists Bulletin, 2018 - European Association of Fish Pathologists
    Exophthalmia was documented among sea cage-cultured pompano (Trachinotus blochii) broodstocks with caligid parasite (Lepeophtheirus spinifer) infestation in the Philippines. Following sequencing, and based on the results of both diagnostic investigations and infection experiments, V. harveyi likely had a role in the reported exophthalmia cases, and this was initiated by L. spinifer infection.
  • Article

    Limit of colour vision in dim light in larvae of the giant freshwater prawn Macrobrachium rosenbergii 

    G Kawamura, TU Bagarinao, ASK Yong, AB Faisal & LS Lim - Fisheries Science, 2018 - Springer Verlag
    Colour vision depends on sufficient ambient light and becomes ineffective at a particular low light intensity. It is not known how decapod crustaceans see colour in dim light. In the present study we investigated the colour vision threshold in larvae of the giant freshwater prawn Macrobrachium rosenbergii in a tank under natural illumination. Plastic beads of different colours (blue, red, yellow and white) in various combinations were suspended in the tank. The larvae swam straight toward the beads and gathered around them. The number of larvae was highest on the blue and white beads. The luminance in the tank was then gradually decreased by covering it with different numbers of layers of black cloth, and the response of the larvae to the beads was video-recorded under infrared illumination. The preference for blue and white beads remained manifest as the luminance was reduced from 418 to 0.07 cd/m2, but not at 0.02 cd/m2, indicating a colour vision threshold between 0.07 and 0.02 cd/m2. The larvae have apposition compound eyes with large optical parameters, comparable to those of apposition eyes of nocturnal insects, which presumably capture more light and show enhanced sensitivity, enabling the larvae to see colour in dim light.
  • Article

    Genetic assessment of milkfish (Chanos chanos Forsskal) stocks based on novel short tandem repeats for marker-aided broodstock management 

    MRR Romana-Eguia, BS Santos, M Ikeda, ZU Basiao & A Kijima - Aquaculture Research, 2018 - John Wiley and Sons
    Milkfish hatchery broodstock are either from on-grown wild-caught or hatchery-produced fry/juveniles. To determine if a marker-assisted management scheme can be formulated for improved milkfish hatchery production, milkfish stocks were genetically characterized using nine novel short tandem repeats or microsatellites. Eight wild-bred Philippine stocks (CLA, CUR, CAM, SIH, SBH-I1, HH, PAL and ZH-P0), four hatchery-bred stocks (SBH-I2, SBH-D, BoH and ZH-F1), two farm stocks of known mixed lineages (SPH and BDH) and one Indonesian hatchery-bred stock (WJH) were assessed. WJH was included since milkfish fingerlings from Indonesia reared in Philippine farms could be developed into future broodstock. Mean allelic richness (Ar) was highest in wild-bred stocks (9.5) and lowest in hatchery-bred spawners (9.1). Mean expected heterozygosities (He) were relatively similar in all stocks with wild-bred stocks slightly higher (0.67) than the others. An analysis of molecular variance indicated significant yet low genetic differentiation among stocks (FST = 0.013; p = .000) where variation (98.6%) was explained by intra-stock differences. In some of the domesticated stocks, reductions in mean allelic richness were observed in first generation hatchery broodstock (e.g. ZH-F1; Ar = 8.3), compared with their founder stock (e.g. ZH-P0; Ar = 9.4). The Indonesian stock was similar to local wild-bred stocks based on genetic variability indices; thus, it might be likely that the local stocks’ fitness traits could be comparable with the imported milkfish stock which has been perceived to be better. The quality of locally available farmed milkfish and prospects of formulating a broodstock management scheme for the production of good quality milkfish seedstock are herewith discussed.
  • Article

    Shelter colour preference of the postlarvae of the giant freshwater prawn Macrobrachium rosenbergii 

    G Kawamura, T Bagarinao, ASK Yong, TC Fen & LS Lim - Fisheries Science, 2017 - Springer Verlag
    The addition of artificial shelters of various materials has been used in Macrobrachium rosenbergii tanks and ponds as a means of increasing productivity. The present study investigated the shelter colour preference of M. rosenbergii postlarvae (age 15–18 days after metamorphosis) in the laboratory. Shelter occupancy tests were performed on four groups of 200 postlarvae in four 57-l aquaria, into which were placed shelters made of rigid coloured netting sewn into four-layered cubes open on two sides. The shelters were presented in six colour pairs: black vs dark green, black vs light green, black vs blue, dark green vs light green, dark green vs blue, and light green vs blue. Colour preference was tested six times for each colour pair. The data obtained were analyzed using Thurstone’s law of comparative judgment. The mean z-score was significantly highest (i.e., highest preference) for the black shelter. Vision was involved in the detection of and approach to the shelter. When released in aquaria, intact-eyed individual postlarvae directly approached the shelter straight away, whereas blind postlarvae (paint over the eyes) swam around randomly and occupied the shelter only after accidental contact much later. Postlarvae in open water out of the shelter exhibited frequent aggressive contact, while those in the shelter were quiescent. The use of black shelters in rearing tanks is thus recommended for reducing stress and aggression among M. rosenbergii postlarvae in the hatchery.
  • Article

    Optimum low salinity to reduce cannibalism and improve survival of the larvae of freshwater African catfish Clarias gariepinus 

    G Kawamura, T Bagarinao, ASK Yong, PW Sao, LS Lim & S Senoo - Fisheries Science, 2017 - Springer Verlag
    The freshwater African catfish Clarias gariepinus is carnivorous and cannibalistic even during the larval and juvenile stages and this behavior causes economic losses in aquaculture. This study examined for the first time the effect of salinity on cannibalism, survival, and growth of African catfish larvae in the hatchery. Larvae (4 days old, median 7.8 mm TL, 2.8 mg BW) of the African catfish were reared for 21 days at nominal salinity 0, 1, 2, 3, 4, 5, 6, and 7 ppt. After 21 days, they grew to 10–39 mm (median 22 mm) and 10–490 mg (median 90 mg), with no significant difference by salinity treatments. Survival ratios were similarly low (24–31%) at 0, 1, 3, and 7 ppt and significantly higher (49–55%) at 2, 4, 5, and 6 ppt. Cannibalism was significantly lower, 15–30% at 4–6 ppt, than the 40–50% at 0–3 and 7 ppt. Size variation was lower at 4–6 ppt and higher at 0–3 and 7 ppt. We recommend hatchery rearing of African catfish at the optimum low salinity of 4–6 ppt rather than in full fresh water at least up to 21 days. This rearing method fosters larval welfare and improves hatchery production.

View more