Genetic assessment of milkfish (Chanos chanos Forsskal) stocks based on novel short tandem repeats for marker-aided broodstock management
Abstract
Milkfish hatchery broodstock are either from on-grown wild-caught or hatchery-produced fry/juveniles. To determine if a marker-assisted management scheme can be formulated for improved milkfish hatchery production, milkfish stocks were genetically characterized using nine novel short tandem repeats or microsatellites. Eight wild-bred Philippine stocks (CLA, CUR, CAM, SIH, SBH-I1, HH, PAL and ZH-P0), four hatchery-bred stocks (SBH-I2, SBH-D, BoH and ZH-F1), two farm stocks of known mixed lineages (SPH and BDH) and one Indonesian hatchery-bred stock (WJH) were assessed. WJH was included since milkfish fingerlings from Indonesia reared in Philippine farms could be developed into future broodstock. Mean allelic richness (Ar) was highest in wild-bred stocks (9.5) and lowest in hatchery-bred spawners (9.1). Mean expected heterozygosities (He) were relatively similar in all stocks with wild-bred stocks slightly higher (0.67) than the others. An analysis of molecular variance indicated significant yet low genetic differentiation among stocks (FST = 0.013; p = .000) where variation (98.6%) was explained by intra-stock differences. In some of the domesticated stocks, reductions in mean allelic richness were observed in first generation hatchery broodstock (e.g. ZH-F1; Ar = 8.3), compared with their founder stock (e.g. ZH-P0; Ar = 9.4). The Indonesian stock was similar to local wild-bred stocks based on genetic variability indices; thus, it might be likely that the local stocks’ fitness traits could be comparable with the imported milkfish stock which has been perceived to be better. The quality of locally available farmed milkfish and prospects of formulating a broodstock management scheme for the production of good quality milkfish seedstock are herewith discussed.
Citation
Romana-Eguia, M. R. R., Santos, B. S., Ikeda, M., Basiao, Z. U., & Kijima, A. (2018). Genetic assessment of milkfish (Chanos chanos Forsskal) stocks based on novel short tandem repeats for marker-aided broodstock management. Aquaculture Research. https://doi.org/10.1111/are.13610
Publisher
John Wiley and SonsSubject
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Article
Systematics, distribution, genetics and life history of milkfish, Chanos chanos
-Environmental Biology of Fishes , 1994 - Springer VerlagChanos chanos belongs to a monotypic gonorynchiform family and is most closely related to the freshwater Ostariophysi. The earliest gonorynchiforms occurred in the Cretaceous of Brazil and west Africa. Chanos occurred in the freshwater Eocene deposits of Europe and North America, and probably invaded the circumtropical Tethys Sea during transgression episodes. At present, milkfish occurs near continental shelves and around oceanic islands throughout the tropical Indo-Pacific. Milkfish populations throughout the range show high genetic variation but low genetic divergence, similar to many other commercially important teleosts. The natural life history of milkfish is one of continual migration. Adults are relatively large (to 1.5 m or 15 kg), long-lived (to 15 years), pelagic and schooling. They spawn offshore near coral reefs or small islands. The eggs, embryos and larvae are pelagic and relatively larger than those of most marine species. Larvae ≥ 10 mm long and 2–3 weeks old move inshore via a combination of passive advection and active migration. Passing shore waters and surf zones, they settle in shallow-water depositional habitats such as mangrove swamps and coral lagoons, where they metamorphose and spend a few months as juveniles. Some juveniles may enter freshwater lakes where they grow into sub-adults but do not mature. Both small juveniles and large sub-adults go back to sea when they reach the size limit supportable by the habitat. Little else is known of the dynamics of wild populations of milkfish. A fishery on inshore larvae supports the centuries-old aquaculture of milkfish in southeast Asia. During the past ten years, milkfish have matured and spawned under various conditions of captivity, and hatcheries have produced larvae to supply the culture ponds. Much remains to be learned concerning the milkfish, particularly its ecology and physiology. -
Article
Meristic variations in milkfish Chanos chanos from Philippine waters
-Marine Biology , 1988 - Springer VerlagVariations in meristic characters occur within and between samples of milkfish Chanos chanos (Forsskal) collected on June 1977 from five localities in Philippine waters. The unbranched anal and ventral fin rays are the most plastic, and vertebral number is the most stable of nine meristic characters examined. The number of ventral fin rays is the only meristic feature which differed consistently enough to suggest distinct population groups: South China Sea, comprising samples from Ilocos and Panay Island; Pacific Ocean from Bicol; and Celebes Sea, from Zamboanga and Davao. A discriminant analysis which incorporated generalized distance (Mahanalobis D2) and percent overlap of a reduced set of characters indicated several morphometric subgroups of milkfish in Philippine waters, although geographic subgroups were not clearly demonstrated. -
Conference paper
Research on marine and freshwater fishes
- In TU Bagarinao & EEC Flores (Eds.), Towards sustainable aquaculture in Southeast Asia and Japan: Proceedings of the Seminar-Workshop on Aquaculture Development in Southeast Asia, Iloilo City, Philippines, 26-28 July, 1994, 1995 - SEAFDEC Aquaculture DepartmentMost of the fish research at SEAFDEC AQD in 1992-1994 was on milkfish. Studies were conducted on year-round spawning through hormonal or environmental manipulation; optimum lipid and protein levels and ration size for captive broodstock; and the influence of spawner age on reproductive performance. The economics of hatchery operations, alone or integrated with broodstock as a commercial enterprise, was assessed. Mass production of larvae was refined with the use of commercial or SEAFDEC-formulated larval diets. Alternative rearing schemes in large tanks and ponds were tried. Hatcheryproduced and wild-caught larvae were compared in terms of growth and production in experimental nursery and grow-out ponds. Supplemental diets for brackishwater grow-out culture were formulated. Studies on broodstock management of grouper Epinephelus spp. included lipid enrichment of the diet and hormonal induction of sex inversion. Seed production techniques were developed but survival rates were low. Grouper culture was found economically feasible in experimental ponds with 'trash' fish as feed. The mangrove red snapper Lutjanus argentimaculatus was successfully induced to spawn with injection of human chorionic gonadotropin. Initial larval rearing trials were successful but survival rates must be improved. Hormonal manipulation of spawning of the Asian sea bass Lates calcarifer allows seed production during most of the year. Photoperiod manipulation leads to maturation of females, but not males, beyond the natural breeding season (April-November). Nursery rearing of 9 mm juveniles is feasible in floating net cages with night lights that attract food zooplankton. The requirements of sea bass for lipid, protein, carbohydrates, and essential amino acids were determined. In the rabbitfish Siganus guttatus, weekly injections of luteinizing hormone releasing hormone analogue (LHRHa) sustains milt production for three weeks. Thyroid hormones injected into broodstocks improved the growth of larvae to day 7. Induced spawning techniques for the Asian catfish Clarias macrocephalus were refined by determining the seasonal responsiveness to LHRHa and pimozide injections and testing for pheromonal induction of spontaneous spawning. The optimum insemination rate was determined and egg hatchability was enhanced by removal of the adhesive coat before incubation. Several practical diets for catfish during grow-out culture were tested against 'trash' fish. The broodstock management for bighead carp Aristichthys nobilis was studied. Cage-reared juveniles from cage-reared broodstock showed the best growth. To improve the reproductive performance, the broodstock diets were supplemented with vitamins A, C, and E. Research on tilapias focused on genetics and strain selection. Several strain testing procedures for Nile tilapia were evaluated in their efficiency to detect economically important strain differences. Reference lines were developed from two existing red tilapia strains to measure and reduce the effects of uncontrolled nongenetic variables in strain evaluation experiments with Nile tilapia. The tolerance of two Nile tilapia strains to heavy metals was similar when gauged by the 24-hour and 96-hour lethal concentration and by fish growth, survival, and reproductive performance. In a separate study, four strains of red tilapia showed generally higher seed production when reared in tanks than in cages. Improvements in the feed and feeding management for Nile tilapia were also studied. Intensive tilapia farming and feeding have led to oxygen depletion and fish kills in Sampaloc Lake. To rehabilitate the lake, it is imperative to reduce the farming area from 30 to 6 hectares; stop the use of commercial feeds; and remove the water hyacinths and other debris. Fish kills in Laguna de Bay have also become serious in recent years, and a review of the occurrences, losses, and possible causes is currently being conducted. Studies on the epizootic ulcerative syndrome of snakeheads in Laguna de Bay have yet to pinpoint the pathogen. Skin lesions in tilapias in several ponds and lakes in the country were found to be due to bacteria.
